|
|
Cite this paper: |
|
|
Quandong XIN, Jufa CHEN, Changkao MU, Xinliang WANG, Wenjing LIU, Tao JIANG, Yan LI. Community composition, co-occurrence, and environmental drivers of bacterioplankton community in surface and 50-m water layers in the subarctic North Pacific[J]. Journal of Oceanology and Limnology, 2023, 41(6): 2309-2323 |
|
|
|
|
|
|
|
Community composition, co-occurrence, and environmental drivers of bacterioplankton community in surface and 50-m water layers in the subarctic North Pacific |
|
| Quandong XIN1,2,3, Jufa CHEN2, Changkao MU3, Xinliang WANG2, Wenjing LIU4, Tao JIANG2, Yan LI1 |
|
1 College of Life Sciences, Yantai University, Yantai 264005, China;
2 Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China;
3 School of Marine Sciences, Ningbo University, Ningbo 315211, China;
4 School of Medicine, Yunnan University, Kunming 650091, China |
|
| Abstract: |
| The Western Subarctic Gyre (WSG) is one of the two gyre-systems in the subarctic North Pacific known for high nutrient and low-chlorophyll waters. However, the bacterioplankton in marine water of this area, either in terms of the taxonomic composition or functional structure, remains relatively unexplored. A total of 22 sampling sites from two water layers (surface water, SW and 50-m layer water, FW) were collected in this area. The physiochemical parameters of waters, Synechococcus, and bacterial density, as well as the bacterioplankton community composition and distribution pattern, were analyzed. The nutrient concentrations of DIN, DIP, and DSi, Chl-a concentration, and the average abundance of heterobacteria in FW were higher than those in SW. However, temperature and the average abundance of Synechococcus and pico-eukaryotes were higher in SW. A total of 3 269 OTUs were assigned, and 2 123 OTUs were commonly shared; moreover, similar alpha diversity patterns were observed in both SW and FW. The bacterioplankton community showed significantly obvious correlation with salinity, DIP, DIN, and Chl a in both SW and FW. Proteobacteria, Cyanobacteria, Bacteroidota, Actinobacteriota, and Firmicutes were the main phyla while Synechococcus_CC9902, Psychrobacter, and Sulfitobacter were the dominant genera in each sampling site. Most correlations that happened between the OTUs in the co-occurrence network were positive and inter-module. Higher edges and graph density were found in SW, indicating that more correlations occurred, and the community was more complex in SW. This study provided novel knowledge on the bacterioplankton community structure and the correlation characteristics in WSG. |
|
| Key words:
Western Subarctic Gyre (WSG)
marine water
bacterioplankton
community
co-occurrence network
|
|
| Received: 2022-11-10 Revised: |
|
|
|
|
References:
Allison S D, Martiny J B H.2008.Resistance, resilience, and redundancy in microbial communities.Proceedings of the National Academy of Sciences of the United States of America, 105(S1):11512-11519, https://doi.org/10.1073/pnas.0801925105.
Amin S A, Hmelo L R, Van Tol H M et al.2015.Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.Nature, 522(7554):98-101, https://doi.org/10.1038/nature14488.
Barak-Gavish N, Frada M, Ku C A et al.2018.Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.Science Advances, 4(10):eaau5716, https://doi.org/10.1126/sciadv.aau5716.
Barberán A, Bates S T, Casamayor E O et al.2014.Using network analysis to explore co-occurrence patterns in soil microbial communities.ISME Journal, 6(4):343-351, https://doi.org/10.1038/ismej.2013.236.
Bowman J S, Ducklow H W.2019.Bacterioplankton.In:Cochran J K, Bokuniewicz H J, Yager P L eds.Encyclopedia of Ocean Sciences.3rd edn Academic Press, Oxford.p.500-507, https://doi.org/10.1016/B978-0-12-409548-9.11404-6.
Buchan A, LeCleir G R, Gulvik C A et al.2014.Master recyclers:features and functions of bacteria associated with phytoplankton blooms.Nature Reviews Microbiology, 12(10):686-698, https://doi.org/10.1038/nrmicro3326.
Campbell A M, Fleisher J, Sinigalliano C et al.2015.Dynamics of marine bacterial community diversity of the coastal waters of the reefs, inlets, and wastewater outfalls of Southeast Florida.Microbiology Open, 4(3):390-408, https://doi.org/10.1002/mbo3.245.
Cao S N, Zhang F, He J F et al.2020.Water masses influence bacterioplankton community structure in summer Kongsfjorden.Extremophiles, 24(1):107-120, https://doi.org/10.1007/s00792-019-01139-y.
Chafee M, Fernàndez-Guerra A, Buttigieg P L et al.2018.Recurrent patterns of microdiversity in a temperate coastal marine environment.The ISME Journal, 12(1):237-252, https://doi.org/10.1038/ismej.2017.165.
Chen S F, Zhou Y Q, Chen Y R et al.2018.Fastp:an ultra-fast all-in-one FASTQ preprocessor.Bioinformatics, 34(17):i884-i890, https://doi.org/10.1093/bioinformatics/bty560.
Chun S J, Cui Y S, Baek S H et al.2021.Seasonal succession of microbes in different size-fractions and their modular structures determined by both macro- and micro-environmental filtering in dynamic coastal waters.Science of the Total Environment, 784:147046, https://doi.org/10.1016/j.scitotenv.2021.147046.
Deming J W.2009.Extremophiles:cold environments.In:Schaechter M ed.Encyclopedia of Microbiology.3rd edn.Academic Press, Oxford.p.147-158.
Duan X P, Guo C, Zhang C et al.2021.Effect of East Asian atmospheric particulate matter deposition on bacterial activity and community structure in the oligotrophic Northwest Pacific.Environmental Pollution, 283:117088, https://doi.org/10.1016/j.envpol.2021.117088.
Edgar R C.2013.UPARSE:highly accurate OTU sequences from microbial amplicon reads.Nature Methods, 10(10):996-998, https://doi.org/10.1038/nmeth.2604.
Fuhrman J A, Cram J A, Needham D M.2015.Marine microbial community dynamics and their ecological interpretation.Nature Reviews Microbiology, 13(3):133-146, https://doi.org/10.1038/nrmicro3417.
Fujiki T, Matsumoto K, Honda M C et al.2009.Phytoplankton composition in the subarctic North Pacific during autumn 2005.Journal of Plankton Research, 31(2):179-191, https://doi.org/10.1093/plankt/fbn108.
Fujiki T, Matsumoto K, Mino Y et al.2014.Seasonal cycle of phytoplankton community structure and photophysiological state in the western subarctic gyre of the North Pacific.Limnology and Oceanography, 59(3):887-900, https://doi.org/10.4319/lo.2014.59.3.0887.
Fujiki T, Matsumoto K, Watanabe S et al.2011.Phytoplankton productivity in the western subarctic gyre of the North Pacific in early summer 2006.Journal of Oceanography, 67(3):295-303, https://doi.org/10.1007/s10872-011-0028-1.
Gilbert J A, Field D, Swift P et al.2009.The seasonal structure of microbial communities in the western English Channel.Environmental Microbiology 11(12):3132-3139, https://doi.org/10.1111/j.1462-2920.2009.02017.x.
Guerrero-Feijóo E, Nieto-Cid M, Sintes E et al.2017.Optical properties of dissolved organic matter relate to different depth-specific patterns of archaeal and bacterial community structure in the North Atlantic Ocean.FEMS Microbiology Ecology, 93(1):fiw224, https://doi.org/10.1093/femsec/fiw224.
Harrison P J, Whitney F A, Tsuda A et al.2004.Nutrient and plankton dynamics in the NE and NW gyres of the subarctic Pacific Ocean.Journal of Oceanography, 60(1):93-117, https://doi.org/10.1023/B:joce.0000038321.57391.2a.
Hattori H, Koike M, Tachikawa K et al.2004.Spatial variability of living coccolithophore distribution in the western Subarctic Pacific and western Bering Sea.Journal of Oceanography, 60(2):505-515, https://doi.org/10.1023/B:JOCE.0000038063.81738.ab.
Hernando-Morales V, Ameneiro J, Teira E.2017.Water mass mixing shapes bacterial biogeography in a highly hydrodynamic region of the southern Ocean.Environmental Microbiology, 19(3):1017-1029, https://doi.org/10.1111/1462-2920.13538.
Imai K, Nojiri Y, Tsurushima N et al.2002.Time series of seasonal variation of primary productivity at station KNOT (44°N, 155°E) in the sub-arctic western North Pacific.Deep Sea Research Part II:Topical Studies in Oceanography, 49(24-25):5395-5408, https://doi.org/10.1016/S0967-0645(02)00198-4.
Ismail N, Almutairi A.2022.Bacterioplankton community profiling of the surface waters of Kuwait.Frontiers in Marine Science, 9:838101, https://doi.org/10.3389/fmars.2022.838101.
Ivanova E P, Alexeeva Y V, Flavier S et al.2004.Formosa algae gen.nov., sp.nov., a novel member of the family Flavobacteriaceae.International Journal of Systematic and Evolutionary Microbiology, 54(3):705-711, https://doi.org/10.1099/ijs.0.02763-0.
Jiang T, Chai C, Wang J F et al.2016.Temporal and spatial variations of abundance of phycocyanin- and phycoerythrin-rich Synechococcus in Pearl River Estuary and adjacent coastal area.Journal of Ocean University of China, 15(5):897-904, https://doi.org/10.1007/s11802-016-3011-z.
Kirchman D L, Cottrell M T, Lovejoy C.2010.The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes.Environmental Microbiology, 12(5):1132-1143, https://doi.org/10.1111/j.1462-2920.2010.02154.x.
Kolodny Y, Zer H, Propper M et al.2021.Marine cyanobacteria tune energy transfer efficiency in their light-harvesting antennae by modifying pigment coupling.The FEBS Journal, 288(3):980-994, https://doi.org/10.1111/febs.15371.
Kwon T, Baek K, Lee K et al.2014.Formosa arctica sp.nov., isolated from Arctic seawater.International Journal of Systematic and Evolutionary Microbiology, 64(1):78-82, https://doi.org/10.1099/ijs.0.056465-0.
Liang Y T, Zhang Y Y, Zhang Y et al.2017.Distributions and relationships of virio- and picoplankton in the epi-, meso- and bathypelagic zones of the western Pacific Ocean.FEMS Microbiology Ecology, 93(2):fiw238, https://doi.org/10.1093/femsec/fiw238.
Liu H B, Imai K, Suzuki K et al.2002.Seasonal variability of picophytoplankton and bacteria in the western subarctic Pacific Ocean at station KNOT.Deep Sea Research Part II:Topical Studies in Oceanography, 49(24-25):5409-5420, https://doi.org/10.1016/S0967-0645(02)00199-6.
Liu H L, Lin G M, Gao D et al.2023.Geographic scale influences the interactivities between determinism and stochasticity in the assembly of sedimentary microbial communities on the South China Sea shelf.Microbial Ecology, 85(1):121-136, https://doi.org/10.1007/s00248-021-01946-x.
Liu J W, Liu X S, Wang M et al.2015.Bacterial and archaeal communities in sediments of the North Chinese Marginal Seas.Microbial Ecology, 70(1):105-117, https://doi.org/10.1007/s00248-014-0553-8.
Lønborg C, Cuevas L A, Reinthaler T et al.2016.Depth dependent relationships between temperature and ocean heterotrophic prokaryotic production.Frontiers in Marine Science, 3:131, https://doi.org/10.3389/fmars.2016.00090.
Magoč T, Salzberg S L.2011.FLASH:fast length adjustment of short reads to improve genome assemblies.Bioinformatics, 27(21):2957-2963, https://doi.org/10.1093/bioinformatics/btr507.
Matsumoto K, Honda M C, Sasaoka K et al.2014.Seasonal variability of primary production and phytoplankton biomass in the western Pacific subarctic gyre:control by light availability within the mixed layer.Journal of Geophysical Research:Oceans, 119(9):6523-6534, https://doi.org/10.1002/2014JC009982.
Moran M A.2015.The global ocean microbiome.Science, 350(6266):aac8455, https://doi.org/10.1126/science.aac8455.
Moriya H, Takita Y, Matsumoto A et al.2020.Cobetia sp.bacteria, which are capable of utilizing alginate or waste Laminaria sp.for poly (3-hydroxybutyrate) synthesis, isolated from a marine environment.Frontiers in Bioengineering and Biotechnology, 8:974, https://doi.org/10.3389/fbioe.2020.00974.
Nishioka J, Takeda S, Kudo I et al.2003.Size-fractionated iron distributions and iron-limitation processes in the subarctic NW Pacific.Geophysical Research Letters, 30(14):1730, https://doi.org/10.1029/2002GL016853.
Obayashi Y, Tanoue E, Suzuki K et al.2001.Spatial and temporal variabilities of phytoplankton community structure in the northern North Pacific as determined by phytoplankton pigments.Deep Sea Research Part I:Oceanographic Research Papers, 48(2):439-469, https://doi.org/10.1016/S0967-0637(00)00036-4.
Qin Q L, Li Y, Zhang Y J et al.2011.Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp.SM9913.The ISME Journal, 5(2):274-284, https://doi.org/10.1038/ismej.2010.103.
Reza M S, Kobiyama A, Yamada Y et al.2018.Basin-scale seasonal changes in marine free-living bacterioplankton community in the Ofunato Bay.Gene, 665:185-191, https://doi.org/10.1016/j.gene.2018.04.074.
Richa K, Balestra C, Piredda R et al.2017.Distribution, community composition, and potential metabolic activity of bacterioplankton in an urbanized Mediterranean Sea coastal zone.Applied and Environmental Microbiology, 83(17):e00494-17, https://doi.org/10.1128/AEM.00494-17.
Sogin M L, Morrison H G, Huber J A et al.2006.Microbial diversity in the deep sea and the underexplored "rare biosphere".Proceedings of the National Academy of Sciences of the United States of America, 103(32):12115-12120, https://doi.org/10.1073/pnas.0605127103.
Sripan D, Wilantho A, Khitmoh K et al.2021.Marine Bacteria community in a 150-m depth Tachai Island, the Southeast Andaman Sea of Thailand.Frontiers in Marine Science, 8:624624, https://doi.org/10.3389/fmars.2021.624624.
Stackebrandt E, Goebel B M.1994.Taxonomic note:a place for DNA-DNA reassociation and 16s RRNA sequence analysis in the present species definition in bacteriology.International Journal of Systematic and Evolutionary Microbiology, 44(4):846-849, https://doi.org/10.1099/00207713-44-4-846.
Strickland J D H, Parsons T R.1972.A Practical Handbook of Seawater Analysis.Fisheries Research Board of Canada, Ottawa, Canada, https://doi.org/10013/epic.46454.d001.
Teeling H, Fuchs B M, Bennke C M et al.2016.Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms.eLife, 5:e11888, https://doi.org/10.7554/eLife.11888.
Torsvik V, Øvreås L, Thingstad T F.2002.Prokaryotic diversity-magnitude, dynamics, and controlling factors.Science, 296(5570):1064-1066, https://doi.org/10.1126/science.1071698.
Wang J, Guo X X, Li Y Y et al.2022.Understanding the variation of bacteria in response to summertime oxygen depletion in water column of Bohai Sea.Frontiers in Microbiology, 13:890973, https://doi.org/10.3389/fmicb.2022.890973.
Wang M M, Ma Y Y, Feng C H et al.2020.Diversity of pelagic and benthic bacterial assemblages in the Western Pacific Ocean.Frontiers in Microbiology, 11:1730, https://doi.org/10.3389/fmicb.2020.01730.
Wang Q, Garrity G M, Tiedje J M et al.2007.Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.Applied and Environmental Microbiology, 73(16):5261-5267, https://doi.org/10.1128/AEM.00062-07.
Welter D K, Ruaud A, Henseler Z M et al.2021.Free-living, psychrotrophic bacteria of the genus Psychrobacter are descendants of pathobionts.mSystems, 6(2):e00258-21, https://doi.org/10.1128/mSystems.00258-21.
Zhang X L, Wang L, Peng S J et al.2022.Abundance, diversity and functional potentials of planktonic bacteria and microeukaryotes in the coral-reef system of Xisha Islands, China.Journal of Ocean University of China, 21(3):748-762, https://doi.org/10.1007/s11802-022-5107-y.
Zhang Y H, Yao P, Sun C et al.2021.Vertical diversity and association pattern of total, abundant and rare microbial communities in deep-sea sediments.Molecular Ecology, 30(12):2800-2816, https://doi.org/10.1111/mec.15937.
|
|
|
|
|
Related Articles: |
|
|
| 1．Muting YAN, Xiaofeng CHEN, Wei CHU, Weixin LI, Minqian LI, Zeming CAI, Han GONG.Microplastic pollution and enrichment of distinct microbiota in sediment of mangrove in Zhujiang River estuary, China[J]. Journal of Oceanology and Limnology, 2023,41(1): 215-228 |
|
| 2．Pinhua XIA, Guoqing LI, Xianfei HUANG, Lei SHI, Xin DU, Tao LIN.Temporal characteristics of algae-denitrifying bacteria co-occurrence patterns and denitrifier assembly in epiphytic biofilms on submerged macrophytes in Caohai Lake, SW China[J]. Journal of Oceanology and Limnology, 2023,41(6): 2276-2291 |
|
| 3．LUO Congqiang, YI Chunlong, NI Leyi, GUO Longgen.Fish-mediated changes in bacterioplankton community composition: an in situ mesocosm experiment[J]. Journal of Oceanology and Limnology, 2018,36(2): 341-350 |
|
|
|
|
|